The primary goal of JAGS is to provide a flexible framework in which simple but detailed models can be defined, and be readily fit to data and develop graphical and tabular summaries in the modern "R Mark"book" style, whilst also saving lots of computing time. JAGS has a large, well-reviewed, user base.
QTL detection using JAGS is relatively straightforward, especially for simpler models. For example, a plant height model with a single 6add127376 alslaul
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